IRMPD spectroscopy b2 ions from protonated tripeptides with 4-aminomethyl benzoic acid residues

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Authors
Kullman, Michael J.
Molesworth, Samuel P.
Berden, Giel
Oomens, Jos
Van Stipdonk, Michael J.
Advisors
Issue Date
2012-02
Type
Article
Keywords
ESI , IRMPD spectroscopy , Peptide fragmentation , Ion structure
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Citation
Kullman, Michael J.; Molesworth, Samuel P.; Berden, Giel; Oomens, Jos & Michael, Van Stipdonk. 2012. IRMPD spectroscopy b2 ions from protonated tripeptides with 4-aminomethyl benzoic acid residues. International Journal of Mass Spectrometry. 9 February 2012.
Abstract

Collision-induced dissociation (CID) of the peptide alanine-4-aminomethylbenzoic acid-glycine, A(AMBz)G generates a prominent b2 ion despite a previous report [E.R. Talaty, T.J. Cooper, S.M. Osburn, M.J. Van Stipdonk, Collision-induced dissociation of protonated tetrapeptides containing β-alanine, γ-aminobutyric acid, É-aminocaproic acid or 4-aminomethylbenzoic acid residues, Rapid Commun. Mass Spectrom. 20 (2006) 3443–3455.] which showed that incorporation of the aromatic amino acid into a peptide sequence inhibits generation of bn ions formed by cleavage to the immediate C-terminal side of the residue. Infrared multiple photon dissociation (IRMPD) spectroscopy and density functional theory (DFT) calculations suggest that the b2 ion generated from A(AMBz)G has an acylium structure. The b2 ion generated from (AMBz)AG, in which the aromatic residue is situated at the amino-terminus, is instead a conventional oxazolone. ⺠Infrared multiple photon dissociation (IRMPD) spectroscopy and density functional theory (DFT) calculations used to study fragmentation of peptides that contain 4-aminomethylbenzoic acid residues. ⺠Dominant product ion from protonated AAG, A(AMBz)G and (AMBz)AG is b2+. ⺠IRMPD and DFT calculations suggest that the b2 ion generated from A(AMBz)G has an acylium structure while b2 ion from (AMBz)AG is instead a conventional oxazolone.

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Publisher
Elsevier
Journal
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Series
International Journal of Mass Spectrometry;2012
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DOI
ISSN
1387-3806
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