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dc.contributor.authorVisvanathan, Mahesh
dc.contributor.authorRao, Shanker
dc.contributor.authorAnand, Vijay
dc.contributor.authorLushington, Gerald H.
dc.contributor.authorNetzer, Michael
dc.contributor.authorBaumgartner, Christian
dc.contributor.authorBousfield, George R.
dc.date.accessioned2013-07-19T22:08:40Z
dc.date.available2013-07-19T22:08:40Z
dc.date.issued2010
dc.identifier.citationMahesh Visvanathan, Shanker Rao, Vijay Anand, Gerald H Lushington, Michael Netzer, Christian Baumgartner, George R Bousfield; A Multi-Tier Data Mining Workflow to Analyze the Age Related Shift from Diglycosylated- to Tetra-glycosylated-FSH Secretion by the Anterior Pituitary; BCB '10 Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology Pages 508-514; ISBN: 978-1-4503-0438-2 doi>10.1145/1854776.1854874en_US
dc.identifier.issn978-1-4503-0438-2
dc.identifier.urihttp://dx.doi.org/10.1145/1854776.1854874
dc.identifier.urihttp://hdl.handle.net/10057/5989
dc.descriptionClick on the DOI link to access this conference paper (may not be free)en_US
dc.description.abstractFSH is a glycoprotein hormone secreted as two major glycosylation variants by the anterior pituitary, which regulates reproduction in adults. As FSH consists of two functionally significant glycoforms, differentially expressed genes related to FSH biosynthesis in the anterior pituitary can help us to understand implications of changes in their relative abundance at the genomic level. Mapping these kinds of biomarker genes and their corresponding pathways is a key technology for studying the elaboration of FSH variants that affect the reproductive system. In this paper we use a multiple tier data mining work flow to identify FSH biosynthesis-related genes in the anterior pituitary. Our methodology combines different filterbased feature selection mechanisms like Linear Regression (LR), Z-Score statistics and the Biomarker Identifier (BMI). Consequently, we identified differentially expressed genes in response to the synthetic estrogen, diethylstilbestrol (DES), treatment in male rats. As a next step, we performed pathway analysis to identify the most relevant metabolic pathways associated with a set of identified genes in a pathway. Finally, we applied Mutual Information (MI) to calculate the measure of association between differentially expressed genes and several biosynthetic and signaling pathways of interest.en_US
dc.language.isoen_USen_US
dc.publisherACMen_US
dc.subjectBMIen_US
dc.subjectLRen_US
dc.subjectMIen_US
dc.subjectBiomarkersen_US
dc.subjectFeature selectionen_US
dc.subjectFollicle stimulating hormoneen_US
dc.titleA multi-tier data mining workflow to analyze the age related shift from diglycosylated- to tetra-glycosylated-FSH secretion by the anterior pituitaryen_US
dc.typeConference paperen_US


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